4 Jul
2022
4 Jul
'22
12:21 p.m.
Hi Xavier,
I added some suggestions for further tests/configuration data to report in the Github
issue. Please report there.
Best,
Hans Ekkehard
--
Prof. Dr. Hans Ekkehard Plesser
Head, Department of Data Science
Faculty of Science and Technology
Norwegian University of Life Sciences
PO Box 5003, 1432 Aas, Norway
Phone +47 6723 1560
Email hans.ekkehard.plesser@nmbu.no<mailto:hans.ekkehard.plesser@nmbu.no>
Home http://arken.nmbu.no/~plesser
On 04/07/2022, 11:54, "Jochen Martin Eppler"
<j.eppler@fz-juelich.de<mailto:j.eppler@fz-juelich.de>> wrote:
Dear Xavier!
This looks like a proper bug. I have created a GitHub issue:
https://github.com/nest/nest-simulator/issues/2426
Please add all additional information there.
We're trying to investigate asap, but with vacation season ahead, this might take a
bit.
Cheers,
Jochen!
On 23.06.22 18:11, Xavier Otazu Porter wrote:
Hello,
I have instaled NEST 3.3 (on a Rocky Linux 8.5) from source.
After entering python and executing "import nest" I receive the following error.
It looks like cannot load some neuron models. I tried to install last git version, but
problem persist. Please, some idea?
Thanks a lot in advance
Xavier
python: /home/neurobit/src/nest-simulator/nestkernel/model_manager.h:321: size_t
nest::ModelManager::get_num_connection_models() const: Assertion `connection_models_[ 0
].size() <= invalid_synindex' failed.
[dcccluster:979935] *** Process received signal ***
[dcccluster:979935] Signal: Aborted (6)
[dcccluster:979935] Signal code: (-6)
[dcccluster:979935] [ 0] /usr/lib64/libpthread.so.0(+0x12c20)[0x7f8c3a3cdc20]
[dcccluster:979935] [ 1] /usr/lib64/libc.so.6(gsignal+0x10f)[0x7f8c398a337f]
[dcccluster:979935] [ 2] /usr/lib64/libc.so.6(abort+0x127)[0x7f8c3988ddb5]
[dcccluster:979935] [ 3] /usr/lib64/libc.so.6(+0x21c89)[0x7f8c3988dc89]
[dcccluster:979935] [ 4] /usr/lib64/libc.so.6(+0x2fa76)[0x7f8c3989ba76]
[dcccluster:979935] [ 5]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libnestkernel.so.3(+0x1aad22)[0x7f8c2a878d22]
[dcccluster:979935] [ 6]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libnestkernel.so.3(_ZN4nest12ModelManager26register_connection_model_EPNS_14ConnectorModelE+0x32d)[0x7f8c2a80f07d]
[dcccluster:979935] [ 7]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libmodels.so.3(_ZN4nest12ModelManager25register_connection_modelINS_24vogels_sprekeler_synapseEEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_28RegisterConnectionModelFlagsE+0x171)[0x7f8c2b04d071]
[dcccluster:979935] [ 8]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libmodels.so.3(_ZN4nest12ModelsModule4initEP14SLIInterpreter+0x2c14)[0x7f8c2afa0404]
[dcccluster:979935] [ 9]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libsli.so.3(_ZN9SLIModule7installERSoP14SLIInterpreter+0x59)[0x7f8c29a22369]
[dcccluster:979935] [10]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libsli.so.3(_ZN14SLIInterpreter9addmoduleEP9SLIModule+0x44)[0x7f8c299c29f4]
[dcccluster:979935] [11]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/../../../nest/libnest.so.3(_Z11neststartupPiPPPcR14SLIInterpreterNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x13cc)[0x7f8c2b6d37ec]
[dcccluster:979935] [12]
/home/neurobit/local/nest_3.3/lib64/python3.8/site-packages/nest/pynestkernel.so(+0x42475)[0x7f8c2b920475]
[dcccluster:979935] [13] /usr/lib64/libpython3.8.so.1.0(+0x1d8faf)[0x7f8c3a9dcfaf]
[dcccluster:979935] [14]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x976)[0x7f8c3a9e5406]
[dcccluster:979935] [15]
/usr/lib64/libpython3.8.so.1.0(_PyFunction_Vectorcall+0x1bf)[0x7f8c3a9a37af]
[dcccluster:979935] [16]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x5da)[0x7f8c3a9e506a]
[dcccluster:979935] [17]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalCodeWithName+0x3e7)[0x7f8c3a9a23c7]
[dcccluster:979935] [18]
/usr/lib64/libpython3.8.so.1.0(PyEval_EvalCode+0x23)[0x7f8c3a9a35a3]
[dcccluster:979935] [19] /usr/lib64/libpython3.8.so.1.0(+0x25114b)[0x7f8c3aa5514b]
[dcccluster:979935] [20] /usr/lib64/libpython3.8.so.1.0(+0x1667e0)[0x7f8c3a96a7e0]
[dcccluster:979935] [21]
/usr/lib64/libpython3.8.so.1.0(PyVectorcall_Call+0x70)[0x7f8c3a96f390]
[dcccluster:979935] [22]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x68d9)[0x7f8c3a9eb369]
[dcccluster:979935] [23]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalCodeWithName+0x3e7)[0x7f8c3a9a23c7]
[dcccluster:979935] [24]
/usr/lib64/libpython3.8.so.1.0(_PyFunction_Vectorcall+0x422)[0x7f8c3a9a3a12]
[dcccluster:979935] [25]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x54d9)[0x7f8c3a9e9f69]
[dcccluster:979935] [26]
/usr/lib64/libpython3.8.so.1.0(_PyFunction_Vectorcall+0x1bf)[0x7f8c3a9a37af]
[dcccluster:979935] [27]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x976)[0x7f8c3a9e5406]
[dcccluster:979935] [28]
/usr/lib64/libpython3.8.so.1.0(_PyFunction_Vectorcall+0x1bf)[0x7f8c3a9a37af]
[dcccluster:979935] [29]
/usr/lib64/libpython3.8.so.1.0(_PyEval_EvalFrameDefault+0x5da)[0x7f8c3a9e506a]
[dcccluster:979935] *** End of error message ***
Aborted (`core' generado)
Computer Vision Center<http://www.cvc.uab.cat>
CONFIDENTIALITY WARNING<http://www.cvc.uab.es/?page_id=7475>
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--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation