14 Oct
2021
14 Oct
'21
4:35 p.m.
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
14 Oct
14 Oct
5:09 p.m.
Dear Alberto,
You can download the previous versions in zip or tar.gz format from the
github repository : https://github.com/nest/nest-simulator/tags
Best regard,
Lionel
On 14/10/2021 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
5:09 p.m.
Dear Alberto,
the old releases are still
available<https://github.com/nest/nest-simulator/releases> on GitHub. This includes
v2.20.1<https://github.com/nest/nest-simulator/releases/tag/v2.20.1>.1>, which I would
recommend over 2.20.0, as it contains a fix for
#1394<https://github.com/nest/nest-simulator/issues/1394>, which could lead to wrong
simulation results under certain circumstances.
Cheers,
Jochen!
On 14.10.21 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list --
users@nest-simulator.org<mailto:users@nest-simulator.org>
To unsubscribe send an email to
users-leave@nest-simulator.org<mailto:users-leave@nest-simulator.org>
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
Prof. Dr. Frauke Melchior
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
4 Nov
4 Nov
9:48 a.m.
Dear experts,
I am trying to install nest 2.20.0 from source, but I am receving this
error. It seems related to pynest.
Any hints?
Thanks
Alberto
Scanning dependencies of target nest
[ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
[ 97%] Linking CXX executable nest
[ 99%] Built target nest
[ 99%] Building CXX object
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
/home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
fatal error: Python.h: No such file or directory
4 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1030:
pynest/CMakeFiles/pynestkernel.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
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Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
j.eppler(a)fz-juelich.de> ha scritto:
Dear Alberto,
the old releases are still available
<https://github.com/nest/nest-simulator/releases> on GitHub. This
includes v2.20.1
<https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which I
would recommend over 2.20.0, as it contains a fix for #1394
<https://github.com/nest/nest-simulator/issues/1394>, which could lead to
wrong simulation results under certain circumstances.
Cheers,
Jochen!
On 14.10.21 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
Prof. Dr. Frauke Melchior
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
--
Vergani, AA
9:52 a.m.
You will have to install the Python development libraries on your system
(sudoku apt-get , and/or use the CMake configuration option
-DPYTHON_INCLUDE_DIR to point to the folder containing it.
Lucky you, it is also a highly Google-able error: "missing Python.h" should
help you out!
Best regards
On Thu, 4 Nov 2021, 09:49 Alberto, <vergani.aa(a)gmail.com> wrote:
Dear experts,
I am trying to install nest 2.20.0 from source, but I am receving this
error. It seems related to pynest.
Any hints?
Thanks
Alberto
Scanning dependencies of target nest
[ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
[ 97%] Linking CXX executable nest
[ 99%] Built target nest
[ 99%] Building CXX object
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
/home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
fatal error: Python.h: No such file or directory
4 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1030:
pynest/CMakeFiles/pynestkernel.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
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Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
j.eppler(a)fz-juelich.de> ha scritto:
Dear Alberto,
the old releases are still available
<https://github.com/nest/nest-simulator/releases> on GitHub. This
includes v2.20.1
<https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which I
would recommend over 2.20.0, as it contains a fix for #1394
<https://github.com/nest/nest-simulator/issues/1394>, which could lead
to wrong simulation results under certain circumstances.
Cheers,
Jochen!
On 14.10.21 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
Prof. Dr. Frauke Melchior
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
--
Vergani, AA
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
9:54 a.m.
Sorry,the "sudoku" is a typo on my tiny phone keyboard;) that should be:
sudo apt-get install python3-dev
On Thu, 4 Nov 2021, 09:52 Robin Gilbert De Schepper, <
robingilbert.deschepper(a)unipv.it> wrote:
You will have to install the Python development
libraries on your system
(sudoku apt-get , and/or use the CMake configuration option
-DPYTHON_INCLUDE_DIR to point to the folder containing it.
Lucky you, it is also a highly Google-able error: "missing Python.h"
should help you out!
Best regards
On Thu, 4 Nov 2021, 09:49 Alberto, <vergani.aa(a)gmail.com> wrote:
Dear experts,
I am trying to install nest 2.20.0 from source, but I am receving this
error. It seems related to pynest.
Any hints?
Thanks
Alberto
Scanning dependencies of target nest
[ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
[ 97%] Linking CXX executable nest
[ 99%] Built target nest
[ 99%] Building CXX object
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
/home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
fatal error: Python.h: No such file or directory
4 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1030:
pynest/CMakeFiles/pynestkernel.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
Virus-free.
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<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
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Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
j.eppler(a)fz-juelich.de> ha scritto:
Dear Alberto,
the old releases are still available
<https://github.com/nest/nest-simulator/releases> on GitHub. This
includes v2.20.1
<https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which I
would recommend over 2.20.0, as it contains a fix for #1394
<https://github.com/nest/nest-simulator/issues/1394>, which could lead
to wrong simulation results under certain circumstances.
Cheers,
Jochen!
On 14.10.21 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
Prof. Dr. Frauke Melchior
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
--
Vergani, AA
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
2:47 p.m.
OK, thanks,
I have installed nest 2.20, but now having this issue related the calling
with pyNN
the idea is to use python3.8, but seems it's going to use python2.7, is
this the possible issue?
Thanks
Alberto
Python 3.8.10 (default, Sep 28 2021, 16:10:42)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license"
for more information.
>> import pyNN
>> import pyNN.nest
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/home/alberto/.local/lib/python3.8/site-packages/pyNN/nest/__init__.py",
line 16, in <module>
import nest
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/__init__.py",
line 26, in <module>
from . import ll_api # noqa
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/ll_api.py",
line 72, in <module>
from . import pynestkernel as kernel # noqa
ImportError: dynamic module does not define module export function
(PyInit_pynestkernel)
Il giorno gio 4 nov 2021 alle ore 09:54 Robin Gilbert De Schepper <
robingilbert.deschepper(a)unipv.it> ha scritto:
Sorry,the "sudoku" is a typo on my tiny
phone keyboard;) that should be:
sudo apt-get install python3-dev
On Thu, 4 Nov 2021, 09:52 Robin Gilbert De Schepper, <
robingilbert.deschepper(a)unipv.it> wrote:
--
Vergani, AA
You will have to install the Python development
libraries on your system
(sudoku apt-get , and/or use the CMake configuration option
-DPYTHON_INCLUDE_DIR to point to the folder containing it.
Lucky you, it is also a highly Google-able error: "missing Python.h"
should help you out!
Best regards
On Thu, 4 Nov 2021, 09:49 Alberto, <vergani.aa(a)gmail.com> wrote:
NEST Users mailing list --
users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
Dear experts,
I am trying to install nest 2.20.0 from source, but I am receving this
error. It seems related to pynest.
Any hints?
Thanks
Alberto
Scanning dependencies of target nest
[ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
[ 97%] Linking CXX executable nest
[ 99%] Built target nest
[ 99%] Building CXX object
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
/home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
fatal error: Python.h: No such file or directory
4 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1030:
pynest/CMakeFiles/pynestkernel.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
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<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
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Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
j.eppler(a)fz-juelich.de> ha scritto:
_______________________________________________ Dear Alberto,
the old releases are still available
<https://github.com/nest/nest-simulator/releases> on GitHub. This
includes v2.20.1
<https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which I
would recommend over 2.20.0, as it contains a fix for #1394
<https://github.com/nest/nest-simulator/issues/1394>, which could lead
to wrong simulation results under certain circumstances.
Cheers,
Jochen!
On 14.10.21 16:35, Alberto wrote:
Dear experts,
I'd like to install the Nest version 2.20.0 instead of the last 3.1.
Is it still available for download?
Thanks
Alberto
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
--
Dr. Jochen Martin Eppler
Phone: +49(2461)61-96653
----------------------------------
Simulation Laboratory Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
Forschungszentrum Juelich GmbH
52425 Juelich
Sitz der Gesellschaft: Juelich
Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
Prof. Dr. Frauke Melchior
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
--
Vergani, AA
_______________________________________________
NEST Users mailing list -- users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
5 Nov
5 Nov
4:09 p.m.
I solved the issue before by changing the NEST_PYTHON_PREFIX with python3.8
path,
but now I am receiving another error and I dont know if the error is more
related to PyNN or still to nest installation
Thanks for any hints
In [1]: import pyNN.nest
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in
__init__(self)
56 try:
---> 57 nest.Install('pynn_extensions')
58 self.extensions_loaded = True
AttributeError: module 'nest' has no attribute 'Install'
During handling of the above exception, another exception occurred:
AttributeError Traceback (most recent call last)
<ipython-input-1-a37af9de74cb> in <module>
----> 1 import pyNN.nest
~/.local/lib/python3.8/site-packages/pyNN/nest/__init__.py in <module>
16 import nest
17
---> 18 from . import simulator
19 from pyNN import common, recording, errors, space, __doc__
20 from pyNN.common.control import DEFAULT_MAX_DELAY,
DEFAULT_TIMESTEP, DEFAULT_MIN_DELAY
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in <module>
323 # --- Initialization, and module attributes
------------------------------------
324
--> 325 state = _State() # a Singleton, so only a single instance ever
exists
326 del _State
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in
__init__(self)
57 nest.Install('pynn_extensions')
58 self.extensions_loaded = True
---> 59 except nest.kernel.NESTError as err:
60 self.extensions_loaded = False
61 self.initialized = False
AttributeError: module 'nest' has no attribute 'kernel'
Il giorno gio 4 nov 2021 alle ore 14:47 Alberto <vergani.aa(a)gmail.com> ha
scritto:
OK, thanks,
I have installed nest 2.20, but now having this issue related the calling
with pyNN
the idea is to use python3.8, but seems it's going to use python2.7, is
this the possible issue?
Thanks
Alberto
Python 3.8.10 (default, Sep 28 2021, 16:10:42)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license"
for more information.
--
Vergani, AA
>> import pyNN
>> import pyNN.nest
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/home/alberto/.local/lib/python3.8/site-packages/pyNN/nest/__init__.py",
line 16, in <module>
import nest
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/__init__.py",
line 26, in <module>
from . import ll_api # noqa
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/ll_api.py",
line 72, in <module>
from . import pynestkernel as kernel # noqa
ImportError: dynamic module does not define module export function
(PyInit_pynestkernel)
Il giorno gio 4 nov 2021 alle ore 09:54 Robin Gilbert De Schepper <
robingilbert.deschepper(a)unipv.it> ha scritto:
Sorry,the "sudoku" is a typo on my tiny
phone keyboard;) that should be:
sudo apt-get install python3-dev
On Thu, 4 Nov 2021, 09:52 Robin Gilbert De Schepper, <
robingilbert.deschepper(a)unipv.it> wrote:
--
Vergani, AA
You will have to install the Python development
libraries on your system
(sudoku apt-get , and/or use the CMake configuration option
-DPYTHON_INCLUDE_DIR to point to the folder containing it.
Lucky you, it is also a highly Google-able error: "missing Python.h"
should help you out!
Best regards
On Thu, 4 Nov 2021, 09:49 Alberto, <vergani.aa(a)gmail.com> wrote:
NEST Users mailing list --
users(a)nest-simulator.org
To unsubscribe send an email to users-leave(a)nest-simulator.org
Dear experts,
I am trying to install nest 2.20.0 from source, but I am receving this
error. It seems related to pynest.
Any hints?
Thanks
Alberto
Scanning dependencies of target nest
[ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
[ 97%] Linking CXX executable nest
[ 99%] Built target nest
[ 99%] Building CXX object
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
/home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
fatal error: Python.h: No such file or directory
4 | #include "Python.h"
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1030:
pynest/CMakeFiles/pynestkernel.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
Virus-free.
www.avast.com
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail>
<#m_8722799844301558012_m_2128122311878736231_m_-8613768935523884505_m_5228272850566082312_m_1847617371376018487_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
j.eppler(a)fz-juelich.de> ha scritto:
> Dear Alberto,
>
> the old releases are still available
> <https://github.com/nest/nest-simulator/releases> on GitHub. This
> includes v2.20.1
> <https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which
> I would recommend over 2.20.0, as it contains a fix for #1394
> <https://github.com/nest/nest-simulator/issues/1394>, which could
> lead to wrong simulation results under certain circumstances.
>
> Cheers,
> Jochen!
>
> On 14.10.21 16:35, Alberto wrote:
>
> Dear experts,
>
> I'd like to install the Nest version 2.20.0 instead of the last 3.1.
>
> Is it still available for download?
>
> Thanks
> Alberto
>
>
> _______________________________________________
> NEST Users mailing list -- users(a)nest-simulator.org
> To unsubscribe send an email to users-leave(a)nest-simulator.org
>
>
>
> --
> Dr. Jochen Martin Eppler
> Phone: +49(2461)61-96653
> ----------------------------------
> Simulation Laboratory Neuroscience
> Jülich Supercomputing Centre
> Institute for Advanced Simulation
>
>
>
>
>
------------------------------------------------------------------------------------------------
>
>
------------------------------------------------------------------------------------------------
> Forschungszentrum Juelich GmbH
> 52425 Juelich
> Sitz der Gesellschaft: Juelich
> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
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Vergani, AA
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8 Nov
8 Nov
12:13 p.m.
Hi Alberto,
it looks like you're using a version of PyNN that does not support NEST
2.20. We'd recommend you upgrade to NEST 3, otherwise you'll have to
downgrade PyNN to a version that was written to support NEST2.20. PyNN is a
tool independent of NEST and we cannot support you further there.
Best of luck
On Fri, 5 Nov 2021 at 16:09, Alberto <vergani.aa(a)gmail.com> wrote:
I solved the issue before by changing the
NEST_PYTHON_PREFIX with
python3.8 path,
but now I am receiving another error and I dont know if the error is more
related to PyNN or still to nest installation
Thanks for any hints
In [1]: import pyNN.nest
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in
__init__(self)
56 try:
---> 57 nest.Install('pynn_extensions')
58 self.extensions_loaded = True
AttributeError: module 'nest' has no attribute 'Install'
During handling of the above exception, another exception occurred:
AttributeError Traceback (most recent call last)
<ipython-input-1-a37af9de74cb> in <module>
----> 1 import pyNN.nest
~/.local/lib/python3.8/site-packages/pyNN/nest/__init__.py in <module>
16 import nest
17
---> 18 from . import simulator
19 from pyNN import common, recording, errors, space, __doc__
20 from pyNN.common.control import DEFAULT_MAX_DELAY,
DEFAULT_TIMESTEP, DEFAULT_MIN_DELAY
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in <module>
323 # --- Initialization, and module attributes
------------------------------------
324
--> 325 state = _State() # a Singleton, so only a single instance ever
exists
326 del _State
~/.local/lib/python3.8/site-packages/pyNN/nest/simulator.py in
__init__(self)
57 nest.Install('pynn_extensions')
58 self.extensions_loaded = True
---> 59 except nest.kernel.NESTError as err:
60 self.extensions_loaded = False
61 self.initialized = False
AttributeError: module 'nest' has no attribute 'kernel'
Il giorno gio 4 nov 2021 alle ore 14:47 Alberto <vergani.aa(a)gmail.com> ha
scritto:
--
Robin De Schepper, MSc
Department of Brain and Behavioral Sciences
Unit of Neurophysiology
University of Pavia, Italy
Via Forlanini 6, 27100 Pavia - Italy
Tel: (+39) 038298-7607
http://www-5.unipv.it/dangelo/
Interested in network modelling?
Discover our framework <https://github.com/dbbs-lab/bsb>:
<https://github.com/dbbs-lab/bsb>
OK, thanks,
I have installed nest 2.20, but now having this issue related the calling
with pyNN
the idea is to use python3.8, but seems it's going to use python2.7, is
this the possible issue?
Thanks
Alberto
Python 3.8.10 (default, Sep 28 2021, 16:10:42)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license"
for more information.
--
Vergani, AA
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>> import pyNN
>> import pyNN.nest
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/home/alberto/.local/lib/python3.8/site-packages/pyNN/nest/__init__.py",
line 16, in <module>
import nest
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/__init__.py",
line 26, in <module>
from . import ll_api # noqa
File
"/home/alberto/nest-simulator-2.20.0-build/lib/python2.7/site-packages/nest/ll_api.py",
line 72, in <module>
from . import pynestkernel as kernel # noqa
ImportError: dynamic module does not define module export function
(PyInit_pynestkernel)
Il giorno gio 4 nov 2021 alle ore 09:54 Robin Gilbert De Schepper <
robingilbert.deschepper(a)unipv.it> ha scritto:
Sorry,the "sudoku" is a typo on my tiny
phone keyboard;) that should be:
sudo apt-get install python3-dev
On Thu, 4 Nov 2021, 09:52 Robin Gilbert De Schepper, <
robingilbert.deschepper(a)unipv.it> wrote:
--
Vergani, AA
You will have to install the Python development
libraries on your
system (sudoku apt-get , and/or use the CMake configuration option
-DPYTHON_INCLUDE_DIR to point to the folder containing it.
Lucky you, it is also a highly Google-able error: "missing Python.h"
should help you out!
Best regards
On Thu, 4 Nov 2021, 09:49 Alberto, <vergani.aa(a)gmail.com> wrote:
> Dear experts,
>
> I am trying to install nest 2.20.0 from source, but I am receving this
> error. It seems related to pynest.
>
> Any hints?
>
> Thanks
> Alberto
>
> Scanning dependencies of target nest
> [ 97%] Building CXX object nest/CMakeFiles/nest.dir/neststartup.cpp.o
> [ 97%] Linking CXX executable nest
> [ 99%] Built target nest
> [ 99%] Building CXX object
> pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o
> /home/alberto/nest-simulator-2.20.0-build/pynest/pynestkernel.cxx:4:10:
> fatal error: Python.h: No such file or directory
> 4 | #include "Python.h"
> | ^~~~~~~~~~
> compilation terminated.
> make[2]: *** [pynest/CMakeFiles/pynestkernel.dir/build.make:68:
> pynest/CMakeFiles/pynestkernel.dir/pynestkernel.cxx.o] Error 1
> make[1]: *** [CMakeFiles/Makefile2:1030:
> pynest/CMakeFiles/pynestkernel.dir/all] Error 2
> make: *** [Makefile:141: all] Error 2
>
>
>
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>
> Il giorno gio 14 ott 2021 alle ore 17:10 Jochen Martin Eppler <
> j.eppler(a)fz-juelich.de> ha scritto:
>
>> Dear Alberto,
>>
>> the old releases are still available
>> <https://github.com/nest/nest-simulator/releases> on GitHub. This
>> includes v2.20.1
>> <https://github.com/nest/nest-simulator/releases/tag/v2.20.1>, which
>> I would recommend over 2.20.0, as it contains a fix for #1394
>> <https://github.com/nest/nest-simulator/issues/1394>, which could
>> lead to wrong simulation results under certain circumstances.
>>
>> Cheers,
>> Jochen!
>>
>> On 14.10.21 16:35, Alberto wrote:
>>
>> Dear experts,
>>
>> I'd like to install the Nest version 2.20.0 instead of the last 3.1.
>>
>> Is it still available for download?
>>
>> Thanks
>> Alberto
>>
>>
>> _______________________________________________
>> NEST Users mailing list -- users(a)nest-simulator.org
>> To unsubscribe send an email to users-leave(a)nest-simulator.org
>>
>>
>>
>> --
>> Dr. Jochen Martin Eppler
>> Phone: +49(2461)61-96653
>> ----------------------------------
>> Simulation Laboratory Neuroscience
>> Jülich Supercomputing Centre
>> Institute for Advanced Simulation
>>
>>
>>
>>
>>
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>>
>>
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>> Vorsitzender des Aufsichtsrats: MinDir Volker Rieke
>> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
>> Karsten Beneke (stellv. Vorsitzender), Dr. Astrid Lambrecht,
>> Prof. Dr. Frauke Melchior
>>
>>
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>>
>>
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>>
>>
>
> --
> Vergani, AA
>
>
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8 comments
4 participants
participants (4)
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Alberto -
Jochen Martin Eppler -
kusch lionel -
Robin Gilbert De Schepper