error at installing nest2.20 from source code

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Abolfazl Ziaeemehr

21 Apr 2020 21 Apr '20

5:27 p.m.

Hello everyone,

I used the source code to install nest simulator 2.20 from here https://nest-simulator.readthedocs.io/en/stable/installation/linux_install.html and did the following steps (I used to do the same steps for version 2.18 without error.) cmake -Dwith-python=3 -DCMAKE_INSTALL_PREFIX:PATH=</install/path> </path/to/NEST/src> make make install make installcheck

I got this error from "make installcheck":

Phase 1: Testing if SLI can execute scripts and report errors ------------------------------------------------------------- Running test 'selftests/test_pass.sli'... Running Apr 21 19:46:31 SLIStartup [Error]: NEST_DATA_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/nest Apr 21 19:46:31 SLIStartup [Error]: NEST_DOC_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/doc/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/doc/nest /usr/bin//bin/nest /usr/share/doc/nest/selftests/test_pass.sli /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: 20: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: Apr: not found Failed: unexpected exit code 127

Running Apr 21 19:46:31 SLIStartup [Error]: NEST_DATA_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/nest Apr 21 19:46:31 SLIStartup [Error]: NEST_DOC_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/doc/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/doc/nest /usr/bin//bin/nest /usr/share/doc/nest/selftests/test_pass.sli /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: 20: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: Apr: not found

*** *** An unexpected exit code usually hints at a bug in the test suite! *** *** Please report the problem at *** https://github.com/nest/nest-simulator/issues *** *** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/reports' *** - '/home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/reports/nest.CgbAi' ***

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 2 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2

-- regards, Abolfazl Ziaeemehr Department of Physics, PhD student in Computational Physics Institute for Advanced Studies in Basic Sciences (IASBS) Tel: 0919 607 4296 Page: iasbs.ac.ir/~a.ziaeemehr

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Charl Linssen

21 Apr 21 Apr

5:33 p.m.

Dear Abolfazl,

Could you please post the output of:

nest-config --prefix nest-config --datadir

Could it be that there is an issue due to using a space in a filename?

Kind regards, Charl

On Tue, Apr 21, 2020, at 17:27, Abolfazl Ziaeemehr wrote: Hello everyone,

I used the source code to install nest simulator 2.20 from herehttps://nest-simulator.readthedocs.io/en/stable/installation/linux_install.html and did the following steps (I used to do the same steps for version 2.18 without error.) cmake -Dwith-python=3 -DCMAKE_INSTALL_PREFIX:PATH=</install/path> </path/to/NEST/src> make make install make installcheck

I got this error from "make installcheck":

regards,

Abolfazl Ziaeemehr Department of Physics, PhD student in Computational Physics Institute for Advanced Studies in Basic Sciences (IASBS) Tel: 0919 607 4296 Page: iasbs.ac.ir/~a.ziaeemehrhttp://iasbs.ac.ir/~a.ziaeemehr

_______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

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------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------

Abolfazl Ziaeemehr

9:14 p.m.

Dear Charl,

Could you please post the output of: nest-config --prefix */usr* nest-config --datadir *share/nest*

I reinstalled the nest package and made sure there is no space in directory names. cmake -Dwith-python=3 -DCMAKE_INSTALL_PREFIX:PATH=/home/abolfazl/prog/nest-install /home/abolfazl/prog/nest-source

regards, Abolfazl

Charl Linssen

22 Apr 22 Apr

12:03 a.m.

Hi,

This is strange: you specified ``-DCMAKE_INSTALL_PREFIX`` as being ``/home/abolfazl/prog/nest-install``, but nest-config reports the prefix as ``/usr``. It might be that you have two installations next to each other, one in each directory. Could you clean all build files in all directories (and any package manager NEST installations that might be present), and double-check the paths reported during the cmake configuration stage, to make sure they are consistent?

Regards, Charl

On Tue, Apr 21, 2020, at 21:14, Abolfazl Ziaeemehr wrote:

...

Dear Charl,

Could you please post the output of: nest-config --prefix */usr* nest-config --datadir *share/nest* ** I reinstalled the nest package and made sure there is no space in directory names. cmake -Dwith-python=3 -DCMAKE_INSTALL_PREFIX:PATH=/home/abolfazl/prog/nest-install /home/abolfazl/prog/nest-source

regards, Abolfazl _______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

Abolfazl Ziaeemehr

8:39 a.m.

Dear Charl,

Thanks for your reply, I completely removed every build files and directories. and reinstalled the package.

$ ./nest-config --prefix */home/abolfazl/prog/nest-build* $ ./nest-config --datadir *share/nest*

After adding the path variable in .bashrc Still I have these errors from make installcheck, and I can not import nest.

FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=9, failures=1)

PyNEST tests: 569 Passed: 559 Skipped: 9 Failed: 1

Phase 8: Running C++ tests (experimental) ----------------------------------------- Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary ---------------------- NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 870 Passed: 859 Skipped: 10 (9 PyNEST) Failed: 1 (1 PyNEST)

*** *** There were errors detected during the run of the NEST test suite! *** *** Please report the problem at *** https://github.com/nest/nest-simulator/issues *** *** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/nest-build/reports' *** - '/home/abolfazl/prog/nest-build/reports/nest.RrYRt' ***

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2

I use cmake version 3.10.2.

regards, Abolfazl

Charl Linssen

10:48 a.m.

Hi Abolfazl,

Great to hear we're making progress. This new error is a tough one, is has cropped up before (https://github.com/nest/nest-simulator/issues/1435) and seems to be installation-related. In particular, it happens when compiled without MPI support, for reasons that are not yet clear to us. Would it be an option for you to compile with MPI support enabled?

Thanks, Charl

On Wed, Apr 22, 2020, at 08:39, Abolfazl Ziaeemehr wrote:

...

Dear Charl,

Thanks for your reply, I completely removed every build files and directories. and reinstalled the package.

$ ./nest-config --prefix */home/abolfazl/prog/nest-build* $ ./nest-config --datadir *share/nest*

After adding the path variable in .bashrc Still I have these errors from make installcheck, and I can not import nest.

FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=9, failures=1)

PyNEST tests: 569 Passed: 559 Skipped: 9 Failed: 1

Phase 8: Running C++ tests (experimental)

Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary

NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 870 Passed: 859 Skipped: 10 (9 PyNEST) Failed: 1 (1 PyNEST)

*** There were errors detected during the run of the NEST test suite!

*** Please report the problem at *** https://github.com/nest/nest-simulator/issues

*** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/nest-build/reports' *** - '/home/abolfazl/prog/nest-build/reports/nest.RrYRt'

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2

I use cmake version 3.10.2.

regards, Abolfazl

NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

*Attachments:*

reports.zip

Abolfazl Ziaeemehr

11:48 a.m.

Hi, with mpi option enable: *cmake -Dwith-python=3 -Dwith-mpi=ON -DCMAKE_INSTALL_PREFIX:PATH=/home/abolfazl/prog/nest-build /home/abolfazl/prog/nest-source*

$ make installcheck

FAIL: testWithMPI (nest.tests.test_sp.test_mpitests.TestStructuralPlasticityMPI) '[script]": {}'.format(failing_tests)) AssertionError: False is not true : The following tests failed when executing with "mpirun -np 2 nosetests [script]": ['/home/abolfazl/prog/nest-build/lib/python3.6/site-packages/nest/tests/test_sp/mpitest_issue_578_sp.py'] FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=8, failures=2)

PyNEST tests: 569 Passed: 559 Skipped: 8 Failed: 2

Phase 8: Running C++ tests (experimental) ----------------------------------------- Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary ---------------------- NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 940 Passed: 919 Skipped: 19 (8 PyNEST) Failed: 2 (2 PyNEST)

Abolfazl Ziaeemehr

24 Apr 24 Apr

7:42 p.m.

...

Hi, with mpi option enable: *cmake -Dwith-python=3 -Dwith-mpi=ON -DCMAKE_INSTALL_PREFIX:PATH=/home/abolfazl/prog/nest-build /home/abolfazl/prog/nest-source*

$ make installcheck

FAIL: testWithMPI (nest.tests.test_sp.test_mpitests. TestStructuralPlasticityMPI) '[script]": {}'.format(failing_tests)) AssertionError: False is not true : The following tests failed when executing with "mpirun -np 2 nosetests [script]": ['/home/abolfazl/prog/nest-build/lib/python3.6/site- packages/nest/tests/test_sp/mpitest_issue_578_sp.py'] FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_ synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=8, failures=2)

PyNEST tests: 569 Passed: 559 Skipped: 8 Failed: 2

Phase 8: Running C++ tests (experimental)

Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary

NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 940 Passed: 919 Skipped: 19 (8 PyNEST) Failed: 2 (2 PyNEST)

*** There were errors detected during the run of the NEST test suite!

*** Please report the problem at *** https://github.com/nest/nest-simulator/issues

*** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/nest-build/reports' *** - '/home/abolfazl/prog/nest-build/reports/nest.eYBJZ'

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 regards, Abolfazl

-- Abolfazl Ziaeemehr Department of Physics, PhD student in Computational Physics Institute for Advanced Studies in Basic Sciences (IASBS) Tel: 0919 607 4296 Page: iasbs.ac.ir/~a.ziaeemehr

Charl Linssen

27 Apr 27 Apr

12:12 p.m.

Hi,

One thing I didn't notice initially is the CMake version. For the next release after NEST 2.20 we will recommend to use CMake version 3.12 or higher (and preferably 3.16+). Could you perhaps try if this might solve your problem?

Thanks! Charl

On Fri, Apr 24, 2020, at 19:42, Abolfazl Ziaeemehr wrote:

...

...
Hi, with mpi option enable: *cmake -Dwith-python=3 -Dwith-mpi=ON -DCMAKE_INSTALL_PREFIX:PATH=/home/abolfazl/prog/nest-build /home/abolfazl/prog/nest-source*

$ make installcheck

FAIL: testWithMPI (nest.tests.test_sp.test_mpitests.TestStructuralPlasticityMPI) '[script]": {}'.format(failing_tests)) AssertionError: False is not true : The following tests failed when executing with "mpirun -np 2 nosetests [script]": ['/home/abolfazl/prog/nest-build/lib/python3.6/site-packages/nest/tests/test_sp/mpitest_issue_578_sp.py'] FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=8, failures=2)

PyNEST tests: 569 Passed: 559 Skipped: 8 Failed: 2

Phase 8: Running C++ tests (experimental)

Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary

NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 940 Passed: 919 Skipped: 19 (8 PyNEST) Failed: 2 (2 PyNEST)

*** There were errors detected during the run of the NEST test suite!

*** Please report the problem at *** https://github.com/nest/nest-simulator/issues

*** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/nest-build/reports' *** - '/home/abolfazl/prog/nest-build/reports/nest.eYBJZ'

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 regards, Abolfazl

-- Abolfazl Ziaeemehr

Department of Physics, PhD student in Computational Physics Institute for Advanced Studies in Basic Sciences (IASBS)

...

Tel: 0919 607 4296 Page: iasbs.ac.ir/~a.ziaeemehr

NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

Abolfazl Ziaeemehr

28 Apr 28 Apr

10:26 a.m.

Hi again, I installed cmake version 3.17.1. nest-simulator can be imported properly. However I got the following error from make installcheck.

=========================================================================== FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=9, failures=1)

PyNEST tests: 569 Passed: 559 Skipped: 9 Failed: 1

Phase 8: Running C++ tests (experimental) ----------------------------------------- Not running C++ tests because NEST was compiled without Boost.

CMakeFiles/installcheck.dir/build.make:77: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:607: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:614: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:208: recipe for target 'installcheck' failed make: *** [installcheck] Error 2

=========================================================================== Thanks, regards Abolfazl

Charl Linssen

29 Apr 29 Apr

12:16 p.m.

Dear Abolfazl,

Thank you for the report. We have been able to reproduce the issue on a particular machine (the Norwegian Saga supercomputer). A GitHub issue already exists for this; see https://github.com/nest/nest-simulator/issues/1435.

Now that we have reproduced the issue, debugging should be a lot easier. Please give us some time to hone in on the source of the problem. We will get back to you as soon as we know more.

Regards, Charl

On Tue, Apr 28, 2020, at 10:26, Abolfazl Ziaeemehr wrote:

...

Hi again, I installed cmake version 3.17.1. nest-simulator can be imported properly. However I got the following error from make installcheck.

=========================================================================== FAIL: test_nn_pre_centered_synapse (nest.tests.test_stdp_nn_synapses.STDPNNSynapsesTest) AssertionError: 0.32057074514327416 != 0.8197400647350731 within 7 places : stdp_nn_pre-centered_synapse test: Resulting synaptic weight 8.197401e-01 differs from expected 3.205707e-01 FAILED (SKIP=9, failures=1)

PyNEST tests: 569 Passed: 559 Skipped: 9 Failed: 1

Phase 8: Running C++ tests (experimental)

Not running C++ tests because NEST was compiled without Boost.

NEST Testsuite Summary

NEST Executable: /home/abolfazl/prog/nest-build/bin/nest SLI Executable : /home/abolfazl/prog/nest-build/bin/sli Total number of tests: 870 Passed: 859 Skipped: 10 (9 PyNEST) Failed: 1 (1 PyNEST)

*** There were errors detected during the run of the NEST test suite!

*** Please report the problem at *** https://github.com/nest/nest-simulator/issues

*** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/nest-build/reports' *** - '/home/abolfazl/prog/nest-build/reports/nest.CN7PI'

CMakeFiles/installcheck.dir/build.make:77: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 1 CMakeFiles/Makefile2:607: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:614: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:208: recipe for target 'installcheck' failed make: *** [installcheck] Error 2

=========================================================================== Thanks, regards Abolfazl _______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

Charl Linssen

21 Apr 21 Apr

5:38 p.m.

Dear Abolfazl,

Could you please post the output of:

nest-config --prefix nest-config --datadir

Could it be that there is an issue due to using a space in a filename?

Kind regards, Charl

On Tue, Apr 21, 2020, at 17:27, Abolfazl Ziaeemehr wrote:

...

Hello everyone,

I used the source code to install nest simulator 2.20 from here https://nest-simulator.readthedocs.io/en/stable/installation/linux_install.html and did the following steps (I used to do the same steps for version 2.18 without error.) `cmake -Dwith-python=3 -DCMAKE_INSTALL_PREFIX:PATH=</install/path> </path/to/NEST/src>` `make ` `make install` `make installcheck`

I got this error from "make installcheck":

Phase 1: Testing if SLI can execute scripts and report errors

Running test 'selftests/test_pass.sli'... Running Apr 21 19:46:31 SLIStartup [Error]: NEST_DATA_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/nest Apr 21 19:46:31 SLIStartup [Error]: NEST_DOC_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/doc/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/doc/nest /usr/bin//bin/nest /usr/share/doc/nest/selftests/test_pass.sli /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: 20: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: Apr: not found Failed: unexpected exit code 127

Running Apr 21 19:46:31 SLIStartup [Error]: NEST_DATA_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/nest Apr 21 19:46:31 SLIStartup [Error]: NEST_DOC_DIR is not usable: Apr 21 19:46:31 SLIStartup [Error]: Directory '/usr/share/doc/nest' does not exist. Apr 21 19:46:31 SLIStartup [Error]: I'm using the default: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/share/doc/nest /usr/bin//bin/nest /usr/share/doc/nest/selftests/test_pass.sli /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: 20: /home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/bin/nest_serial: Apr: not found

*** An unexpected exit code usually hints at a bug in the test suite!

*** Please report the problem at *** https://github.com/nest/nest-simulator/issues

*** To help us diagnose the problem, please attach the archived content *** of these directories to the issue: *** - '/home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/reports' *** - '/home/abolfazl/prog/install-dir/nest-simulator-2.20.0_build/reports/nest.CgbAi'

CMakeFiles/installcheck.dir/build.make:57: recipe for target 'CMakeFiles/installcheck' failed make[3]: *** [CMakeFiles/installcheck] Error 2 CMakeFiles/Makefile2:99: recipe for target 'CMakeFiles/installcheck.dir/all' failed make[2]: *** [CMakeFiles/installcheck.dir/all] Error 2 CMakeFiles/Makefile2:106: recipe for target 'CMakeFiles/installcheck.dir/rule' failed make[1]: *** [CMakeFiles/installcheck.dir/rule] Error 2 Makefile:188: recipe for target 'installcheck' failed make: *** [installcheck] Error 2 --

regards, Abolfazl Ziaeemehr

Department of Physics, PhD student in Computational Physics Institute for Advanced Studies in Basic Sciences (IASBS)

...

Tel: 0919 607 4296 Page: iasbs.ac.ir/~a.ziaeemehr _______________________________________________ NEST Users mailing list -- users@nest-simulator.org To unsubscribe send an email to users-leave@nest-simulator.org

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participants (3)

Abolfazl Ziaeemehr
Charl Linssen
Charl Linssen