(pd_nestml) wdg562@SUN1027631 NESTML_components % python3 create_gap_dopamod_synapse.py -- N E S T -- Copyright (C) 2004 The NEST Initiative Version: 3.8.0 Built: Aug 27 2024 04:38:39 This program is provided AS IS and comes with NO WARRANTY. See the file LICENSE for details. Problems or suggestions? Visit https://www.nest-simulator.org Type 'nest.help()' to find out more about NEST. WARNING:root:PyGSL is not available. The stiffness test will be skipped. WARNING:root:Error when importing: No module named 'pygsl' [1,GLOBAL, INFO]: List of files that will be processed: [2,GLOBAL, INFO]: /opt/miniconda3/envs/pd_nestml/models/neurons/aeif_cond_alpha_neuron.nestml [3,GLOBAL, INFO]: /opt/miniconda3/envs/pd_nestml/models/synapses/dopamine_synapse_NEW.nestml [4,GLOBAL, INFO]: Target platform code will be generated in directory: '/opt/miniconda3/envs/pd_nestml/models/gap-dopamod-component-new' -- N E S T -- Copyright (C) 2004 The NEST Initiative Version: 3.8.0 Built: Aug 27 2024 04:38:39 This program is provided AS IS and comes with NO WARRANTY. See the file LICENSE for details. Problems or suggestions? Visit https://www.nest-simulator.org Type 'nest.help()' to find out more about NEST. [5,GLOBAL, INFO]: The NEST Simulator version was automatically detected as: v3.8.0 [6,GLOBAL, INFO]: Given template root path is not an absolute path. Creating the absolute path with default templates directory '/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/codegeneration/resources_nest/point_neuron' [7,GLOBAL, INFO]: Given template root path is not an absolute path. Creating the absolute path with default templates directory '/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/codegeneration/resources_nest/point_neuron' [8,GLOBAL, INFO]: Given template root path is not an absolute path. Creating the absolute path with default templates directory '/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/codegeneration/resources_nest/point_neuron' [9,GLOBAL, INFO]: The NEST Simulator installation path was automatically detected as: /opt/miniconda3/envs/pd_nestml [10,GLOBAL, INFO]: Start processing '/opt/miniconda3/envs/pd_nestml/models/neurons/aeif_cond_alpha_neuron.nestml'! [11,aeif_cond_alpha_neuron_nestml, INFO, [63:28;63:55]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [12,aeif_cond_alpha_neuron_nestml, INFO, [64:30;64:83]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [13,aeif_cond_alpha_neuron_nestml, INFO, [65:30;65:83]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [14,GLOBAL, INFO]: Start processing '/opt/miniconda3/envs/pd_nestml/models/synapses/dopamine_synapse_NEW.nestml'! [15,dopamine_synapse_nestml, INFO, [28:27;28:27]]: Implicit casting from (compatible) type 'integer' to 'real'. [16,dopamine_synapse_nestml, INFO, [31:24;31:24]]: Implicit casting from (compatible) type 'integer' to 'real'. [17,dopamine_synapse_nestml, INFO, [46:21;46:29]]: Implicit casting from (compatible) type '1 / ms' to 'real'. [18,aeif_cond_alpha_neuron_nestml, WARNING, [83:8;83:17]]: Variable 'a' has the same name as a physical unit! [19,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:39]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [20,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:43]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [21,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:53]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [22,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:65]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [23,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:77]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [24,aeif_cond_alpha_neuron_nestml, INFO, [67:16;67:81]]: Implicit magnitude conversion from mV nS to pA buffer with factor 1.0 [25,aeif_cond_alpha_neuron_nestml, INFO, [68:14;68:34]]: Implicit magnitude conversion from mV nS to pA with factor 1.0 [26,aeif_cond_alpha_neuron_nestml, INFO, [63:28;63:55]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [27,aeif_cond_alpha_neuron_nestml, INFO, [64:30;64:83]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [28,aeif_cond_alpha_neuron_nestml, INFO, [65:30;65:83]]: Implicit casting from (compatible) type 'mV nS' to 'pA'. [29,dopamine_synapse_nestml, WARNING, [29:8;29:28]]: Variable 'd' has the same name as a physical unit! [30,dopamine_synapse_nestml, ERROR, [42:4;43:4]]: emit_spike() function was called, but with different parameter types than the output port was defined with! [31,dopamine_synapse_nestml, ERROR, [19:0;56:0]]: Equations defined but integrate_odes() not called [32,dopamine_synapse_nestml, INFO, [28:27;28:27]]: Implicit casting from (compatible) type 'integer' to 'real'. [33,dopamine_synapse_nestml, INFO, [31:24;31:24]]: Implicit casting from (compatible) type 'integer' to 'real'. [34,dopamine_synapse_nestml, INFO, [46:21;46:29]]: Implicit casting from (compatible) type '1 / ms' to 'real'. [35,dopamine_synapse_nestml, WARNING, [19:0;56:0]]: Model 'dopamine_synapse_nestml' contains errors. No code generated! Traceback (most recent call last): File "/Users/wdg562/Documents/NEST_simulations/NESTML_components/create_gap_dopamod_synapse.py", line 23, in generate_nest_target(input_path=input_path, File "/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/frontend/pynestml_frontend.py", line 291, in generate_nest_target generate_target(input_path, target_platform="NEST", target_path=target_path, logging_level=logging_level, File "/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/frontend/pynestml_frontend.py", line 215, in generate_target return process() ^^^^^^^^^ File "/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/frontend/pynestml_frontend.py", line 511, in process models = transform_models(transformers, models) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/frontend/pynestml_frontend.py", line 453, in transform_models models = transformer.transform(models) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/miniconda3/envs/pd_nestml/lib/python3.12/site-packages/pynestml/transformers/synapse_post_neuron_transformer.py", line 628, in transform raise Exception("Synapse used in pair (\"" + synapse_name + "\") not found") # XXX: log error ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Exception: Synapse used in pair ("dopamine_synapse") not found (pd_nestml) wdg562@SUN1027631 NESTML_components %